Digestive budget twin

phagocyte, alive: the cell keeps working while you watch. Every motion runs at a rate from a source, and the panel below drives it.

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Control panel

How much of a macrophage does one engulfment cost? Move the sliders; the volume fraction follows.

Phagosome volume per engulfment

0.905 um3

Budget 4,849 um3. Budget given with the twin: the bar is the share of it this cell uses.

The macrophage cannot engulf a particle whose volume exceeds its own cell volume; this twin shows the per-engulfment cost as a fraction of cell volume. The budget is exhausted when phagosome volume equals cell volume.

source 1source 2,

Inputs

9.3 to 30 um · low end human blood monocytes; upper end not attributable to a measurement · mean cell volume by Coulter counter, converted to a sphere-equivalent diameter · Nibbering PH et al. 1990, J Immunol Methods; upper end thin; see note for measured tissue diameters · source

The low end is not a macrophage diameter. Nibbering 1990 measured human blood monocytes at 421 fL in suspension, which is a sphere of 9.3 um, so that end is a monocyte volume converted to a diameter and not a measured macrophage. The 30 um upper end rests on a review statement rather than a measurement and is thin. The only measured human tissue macrophage diameters available are 14.2 um (carbon-negative) and 16.1 um (carbon-containing) in alveolar macrophages, from Baker J et al. 2025, ERJ Open Res (https://pubmed.ncbi.nlm.nih.gov/41189586/). Four cautions travel with those two numbers. The cohort is COPD patients and smokers and the same paper states COPD alveolar macrophages are larger than those of nonsmokers, so a healthy value would be lower. They are profile diameters measured on 4 um paraffin sections with no stereological correction stated, and a section through a cell is smaller than the cell unless it passes through the centre, so they underestimate. Those two errors run in opposite directions and neither is quantified here. And they sit below the 20 um threshold at which Szkalisity A et al. 2025, EMBO J (https://pubmed.ncbi.nlm.nih.gov/40195500/) excluded cultured human monocyte-derived macrophages as not yet differentiated, which is the evidence that a culture population and a tissue population are not the same cell and that the culture threshold must not be used as a floor for tissue. That paper is CC BY-NC: the licence restricts reuse of its figures, not citation of its numbers. EMPIAR-13420 segmentation will replace this whole row with a measured distribution.

0.8 to 8 um · human and mouse, review · fluorescence microscopy and review · Aderem A, Underhill DM 1999, Annu Rev Immunol · source

phagosome diameter matches the engulfed target: bacteria form ~0.8-1.5 um phagosomes; yeast 2-5 um; erythrocytes 6-8 um; see also Flannagan et al. 2012 (https://pubmed.ncbi.nlm.nih.gov/21910624/)

1 to 5 phagosomes · mouse (BALB/c), resident peritoneal macrophages, in vitro · derived: uptake rate 4.45 apoptotic cells/h (Licht 1999, PMID 10089102) combined with phagosome maturation time of minutes to tens of minutes (Flannagan 2012, PMID 21910624); no direct measurement of simultaneous phagosome count per macrophage found open-access · Licht R et al. 1999, J Immunol Methods · source

Derived slider, not a directly measured simultaneous phagosome count. Inputs: (1) uptake rate from Licht 1999 (PMID 10089102): 4.45 apoptotic thymocytes per macrophage per hour, with two taken within 10 min at peak; (2) phagosome maturation time from Flannagan 2012 (PMID 21910624): minutes to tens of minutes. Together these constrain the simultaneous load to 1 to 5. Moving the slider changes how many phagosome bodies are drawn inside the cell.

0 to 1 · mouse (BALB/c), resident peritoneal macrophages, in vitro · on/off trigger for the phagocytosis_apoptotic process; 1 = efferocytosis running at 4.45 apoptotic cells/h; 0 = process idle · Licht R et al. 1999, J Immunol Methods · source

Panel switch for the efferocytosis process. Set to 0 for a resting macrophage that is not actively engulfing; set to 1 to run the sourced rate (Licht 1999: 4.45 +/- 0.70 per h). Read back from step().processes.

1 to 5 cells · mouse (BALB/c), resident peritoneal macrophages, in vitro · in vitro phagocytosis assay; the maximal uptake observation (>5 per h) and near-simultaneous engulfment (2 within 10 min) constrain the number of available targets near the macrophage; in vivo densities in healthy tissue are not available open-access · Licht R et al. 1999, J Immunol Methods · source

Controls how many apoptotic target cells are drawn in the macrophage's environment. The range reflects the in vitro assay upper bound, not a measured tissue density.

Readouts

Cell volume
4,849 um3
4,849 to 4,849 um3 exact
human and mouse · sphere geometry on measured diameter range  · source 1
Exact given inputs.
Phagosome volume (one)
0.905 um3
0.268 to 268 um3 propagated
human and mouse · sphere geometry on measured phagosome diameter range  · source 1 · source 2
Interval from evaluating at the ends of each input range; assumes the formula moves one way in each input.
Phagosome membrane area (one)
4.52 um2
2.01 to 201 um2 propagated
human and mouse · sphere surface geometry on phagosome diameter range  · source 1
Interval from evaluating at the ends of each input range; assumes the formula moves one way in each input.
Cell volume consumed per engulfment
0.019 %
0.002 to 63.7 % propagated
human and mouse · ratio of sphere volumes from measured diameter ranges; Champion and Mitragotri 2006 showed phagocytosis fails when particle volume exceeds cell volume  · source 1 · source 2
Interval from evaluating at the ends of each input range; assumes the formula moves one way in each input.

Withheld

Active phagosomes per resting macrophage
No verified primary source for the number of active phagosomes in a resting tissue macrophage; imaging studies use artificial bead loads that do not reflect the physiological steady-state count

Sources

Research use only. Every number here is geometry on published ranges, not a measurement of any individual.

Public datasets 11

EMPIAR-13420 serial block face SEM and focused ion beam SEM, with segmentation models; 60 nm isotropic voxel Homo sapiens
SBF-SEM and FIB-SEM datasets and models of human macrophage and A431 cells
Szkalisity Á, Vanharanta L et al. 2025, EMBO J  · paper  · public at EMPIAR; CC0  · accession resolved 2026-09-12 via EMPIAR API
EMPIAR-12457 cryo-electron tomography of FIB-milled lamellae; 2.414 nm voxel Homo sapiens
Cryo-ET dataset of FIB-milled mock infected (control) human monocyte-derived macrophages
Kreysing JP, Heidari M et al. 2025, Cell  · paper  · public at EMPIAR; CC0  · accession resolved 2026-09-12 via EMPIAR API
EMPIAR-12454 cryo-electron tomography of FIB-milled lamellae; 2.414 nm voxel Homo sapiens
Cryo-ET dataset of FIB-milled HIV-1 infected human monocyte-derived macrophages
Kreysing JP, Heidari M et al. 2025, Cell  · paper  · public at EMPIAR; CC0  · accession resolved 2026-09-12 via EMPIAR API
EMPIAR-10459 focused ion beam SEM; 50 nm voxel Danio rerio
FIB SEM images of a Zebrafish hindbrain macrophage containing 2 Toxoplasma gondii tachizoites
Yoshida N, Domart MC et al., EMPIAR deposition  · not stated in the EMPIAR entry  · public at EMPIAR; CC0  · accession resolved 2026-09-12 via EMPIAR API
EMPIAR-10461 serial block face SEM; 332 to 472 nm voxel survey Danio rerio
SBF SEM images of a Zebrafish hindbrain macrophage containing 2 Toxoplasma gondii tachizoites
Yoshida N, Domart MC et al., EMPIAR deposition  · not stated in the EMPIAR entry  · public at EMPIAR; CC0  · accession resolved 2026-09-12 via EMPIAR API
GSE303859 single-cell RNA-seq Homo sapiens
Profibrotic monocyte-derived alveolar macrophages as a biomarker and therapeutic target in systemic sclerosis
Markov NS et al. 2025, bioRxiv preprint  · paper  · public at NCBI GEO  · accession resolved 2026-09-12 via eutils esummary
GSE290325 single-cell RNA-seq Mus musculus
Ontogeny-independent expression of LPCAT2 in granuloma macrophages during experimental visceral leishmaniasis
Dey S et al. 2026, Commun Biol  · paper  · public at NCBI GEO  · accession resolved 2026-09-12 via eutils esummary
GSE263770 single-cell RNA-seq Mus musculus
Resolvin D1-mediated cellular crosstalk protects against MASH [scRNA-seq]
Navarro-Corcuera A et al. 2025, JHEP Rep  · paper  · public at NCBI GEO  · accession resolved 2026-09-12 via eutils esummary
GSE315482 single-cell multi-omics Mus musculus
Single-Cell Multi-omics Profiling of Mouse Hepatic Immune Microenvironment Reveals Neutrophil-Kupffer Cell Crosstalk
GEO series record, no linked publication  · no PubMed id linked in the GEO record  · public at NCBI GEO  · accession resolved 2026-09-12 via eutils esummary
GSE313529 single-cell RNA-seq Homo sapiens
Single-cell RNA-seq of bronchoalveolar lavage from bronchiolitis obliterans after allogeneic hematopoietic stem cell transplantation
GEO series record, no linked publication  · no PubMed id linked in the GEO record  · public at NCBI GEO  · accession resolved 2026-09-12 via eutils esummary
GSE245311 spatial multiomics Homo sapiens
Multiomic spatial landscape of innate immune cells at human central nervous system borders
GEO series record, no linked publication  · no PubMed id linked in the GEO record  · public at NCBI GEO  · accession resolved 2026-09-12 via eutils esummary

Public datasets on macrophages and other phagocytes. Every accession resolved at its own endpoint on 2026-09-12 before it entered this file: EMPIAR entries through the EMPIAR API, GEO series through NCBI eutils esummary. Titles are the ones the archive returns, not paraphrases. The imaging entries come first because the twin's geometry is meant to rest on them rather than on textbook ranges.